James S. Santangelo, PhD

James S. Santangelo, PhD

Postdoctoal Fellow, Department of Integrative Biology at the University of California Berkeley

Publications

Peer-reviewed journals

  1. Keerath Bhachu, Hind Emad Fadoul, James S. Santangelo, Marc T. J. Johnson. 2024. Tissue-specific expression of HCN and its metabolic precursors in Trifolium repens., Botany In Press.

  2. Aude E. Caizergues, James S. Santangelo, Rob W. Ness, Fabio Angeoletto, Daniel Anstett, Julia Anstett, Fernanda Baena-Diaz, Elizabeth J. Carlen, Jaime A. Chaves, Mattheau S. Comerford, Karen Dyson, Mohsen Falahati-Anbaran, Mark D.E. Fellowes, Kathryn A. Hodgins, Glen R. Hood, Carlos Iñiguez-Armijos, Nicholas J. Kooyers, Adrián Lázaro-Lobo, Angela T. Moles, Jason Munshi-South, Juraj Paule, Ilga M. Porth, Luis Y. Santiago-Rosario, Kaitlin Stack Whitney, Ayko J.M. Tack, Marc T.J. Johnson. 2024. Does urbanization lead to parallel demographic shifts across the world in a cosmopolitan plant?, Molecular Ecology 33: e17311.

  3. James S. Santangelo, Paul Battlay, Brandon T. Hendrickson, Wen Hsi-Kuo, Kenneth M. Olsen, Nicholas J. Kooyers, Marc T. J. Johnson, Kathryn A. Hodgins, Rob W. Ness. 2023. Haplotype-Resolved, Chromosome-Level Assembly of White Clover (Trifolium repens L., Fabaceae), Genome Biology and Evolution 15: evad146.

  4. Santangelo, James S., Cindy Roux, Marc T. J. Johnson. 2022. The effects of environmental hetergeneity on the evolution of clines within a city, Journal of Ecology 110: 2950-2959.

  5. Brian C.Verrelli, Marina Alberti, Simone Des Roches, Nyeema C. Harris, Andrew P. Hendry, Marc T. J. Johnson, Amy M. Savage, Anne Charmantier, Kiyoko M. Gotanda, Lynn Govaert, Lindsay S. Miles, L. Ruth Rivkin, Kristin M. Winchell, Kristien I. Brans, Cristian Correa, Sarah E. Diamond, Ben Fitzhugh, Nancy B. Grimm, Sara Hughes, John M. Marzluff, Jason Munshi-South, Carolina Rojas, James S. Santangelo, Christopher J. Schell, Jennifer A. Schweitzer, Marta Szulkin, Mark C. Urban, Yuyu Zhou, Carly Ziter. 2022. A global horizon scan for urban evolutionary ecology, Trends in Ecology & Evolution 37: 1006-1019.

  6. Simon G. Innes., James S. Santangelo, Nicholas J. Kooyers, Kenneth M. Olsen, Marc T. J. Jonhson. 2022. Evolution in response to climate in the native and introduced ranges of a globally distributed plant, Evolution 76: 1495-1511.

  7. James S. Santangelo, plus 286 authors from The GLobal Urban Evolution Project (GLUE). 2022. Global urban environmental change drives adaptation in white clover, Science 1275-1281.

  8. James S. Santangelo, L. Ruth Rivkin, Carole Advenard, Ken A. Thompson. 2020. Multivariate phenotypic divergence along an urbanization gradient, Biology Letters 16: 20200511.

  9. James S. Santangelo, Ken A. Thompson, Beata J. Cohan, Jibran Syed, Rob W. Ness, Marc T. J. Johnson. 2020. Predicting the strength of urban-rural clines in a Mendelian polymorphism along a latitudinal gradient, Evolution Letters 4: 212-225.

  10. Luke W. Johnston, Madeleine Bonsma-Fisher, Joel Ostblom, Ahmed R. Hasan, James S. Santangelo, Lindsay Coome, Lina Tran, Elliott Sales de Andrade, and Sara Mahallati. 2019. A graduate student-led participatory live-coding quantitative methods course in R: Experiences on initiating, developing, and teaching, Journal of Open Source Education 2: 6-11.

  11. L. Ruth Rivkin, James S. Santangelo, Marina Alberti, Myla F. J. Aronson, Charlotte W. de Keyzer, Sarah E. Diamond, Marie-Josée Fortin, Lauren J. Frazee, Amanda J. Gorton, Andrew P. Hendry, Yang Liu, Jonathan B. Josos, J. Scott MacIvor, Ryan A. Martin, Mark J. McDonnell, Lindsay S. Miles, Jason Munshi-South, Robert W. Ness, Amy E. M. Newman, Mason R. Stothart, Panagiotis Theodorou, Ken A. Thompson, Brian C. Verrelli, Andrew Whitehead, Kristin M. Winchell, Marc T. J. Johnson. 2019. A roadmap for urban evolutionary ecology, Evolutionary Applications 12: 384-398.

  12. James S. Santangelo, Ken A. Thompson, Marc T. J. Johnson. 2019. Herbivores and plant defenses affect selection on plant reproductive traits more strongly than pollinators, Journal of Evolutionary Biology 32: 4-18.

  13. James S. Santangelo, L. Ruth Rivkin, and Marc T. J. Johnson. 2018. The evolution of city life, Proceedings of the Royal Society B 285: 20181529.

  14. James S. Santangelo, Marc T. J. Johnson, and Rob W. Ness. 2018. Modern spandrels: the roles of genetic drift, gene flow and selection in the evolution of parallel clines, Proceedings of the Royal Society B 285: 20180230.

  15. Marc W. Cadotte, Stuart W. Livingstone, Simone-Louise E. Yasui, Russel Dinnage, Jin-Tian Li, Robin Marushia, James S. Santangelo, and Wensheng Shu. 2017. Explaining ecosystem multifunction with evolutionary models, Ecology 98: 3175-3187.

  16. James S. Santangelo, and Peter M. Kotanen. 2015. Non-systemic fungal endophytes increase survival but reduce tolerance to simulated herbivory in subarctic Festuca rubra, Ecosphere 7: e01260.

  17. James S. Santangelo, Nash E. Turley, and Marc T. J. Johnson. 2015. Fungal endophytes of Festuca rubra increase in frequency following long-term exclusion of rabbits, Botany 93: 223-241.

Book chapters

  1. James S. Santangelo, Lindsay M. Miles, Sophie, T. Breitbart, David Murray-Stoker, L. Ruth Rivkin, Marc T. J. Johnson, and Rob W. Ness. 2020. Urban environments as a framework to study parallel evolution, In: Urban Evolutionary Biology. Edited by: Marta Szulkin, Jason Munshi-South, and Anne Charmantier. pp. 389-410. Oxford University Press.

Preprints

  1. Jill T. Anderson, Megan L. DeMarche, Derek A. Denney, Ian Breckheimer, James S. Santangelo, Susana M. Wadgymar.. 2024. Adaptation and gene flow are insufficient for persistence of an alpine plant under climate change., Science, Submitted.

  2. Paul Battlay, Brandon T. Hendrickson, Jonas I. Mendez-Reneau, James S. Santangelo, Lucas Albano, Jonathan Wilson, Aude E. Caizergues, Nevada King, Adriana Puentes, Amelia Tudoran, Cyrille Violle, Francois Vasseur, Courtney M. Patterson, Michael Foster, Caitlyn Stamps, Simon G. Innes, Remi Allio, Fabio Angeoletto, Daniel N. Anstett, Julia Anstett, Anna Bucharova, Mattheay S. Comerford, Satiago Daivd, Mohsen Falahati-Anbaran, William Godsoe, César González-Lagos, Pedro E. Gundel, Glen R. Hood, Regina Karousou, Christian Lampei, Carlos Lara, Adrián Lázaro-Lobo, Deleon Leandro, Thomas J.S. Merritt, Nora Mitchell, Mitra Mohammadi Bazarganim, Angela Moles, Maureen Murúa, Juraj Paule, Vera Pfeiffer, Joost A. M. Raeymaekers, Diana Rennison, Rodrigo S. Rios, Jennifer K. Rownstree, Adam C. Schneider, Kaitlin Stack Whitchey, Ítalo Tamburrino, Acer VanWallendael, Paul Y. Kim, Rob W. Ness, Marc T. J. Johnson, Kathryn A. Hodgins, Nicholas J. Kooyers. 2024. Does urbanization lead to parallel demographic shifts across the world in a cosmopolitan plant?, PNAS, Submitted.

  3. David Murray-Stoker, James S. Santangelo, Marta Szulkin, Marc T. J. Johnson. 2024. Comparing approaches to quantify urbanization on a multicontinental scale, .

Educational resources (not peer-reviewed)

  1. James S. Santangelo. 2019. Data simulation and randomization tests, NEON Faculty Mentoring Network, QUBES Educational Resources.